PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000124187
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 246aa    MW: 27923.7 Da    PI: 6.8463
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000124187genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035168181114
                    EEETTTTEEESSHH CS
        zf-C2H2   1 ykCpdCgksFsrks 14 
                    y+Cp C+ksF++ s
  MDP0000124187 168 YSCPVCSKSFRNMS 181
                    99********9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5127013.17866130IPR017921Zinc finger, CTCHY-type
SuperFamilySSF1612458.89E-796124No hitNo description
Gene3DG3DSA:3.30.40.102.5E-14128190IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.88E-10129181No hitNo description
PfamPF146343.5E-7130175IPR001841Zinc finger, RING-type
PROSITE profilePS5008911.634131174IPR001841Zinc finger, RING-type
CDDcd001624.62E-6131177No hitNo description
SMARTSM001841.0E-6131173IPR001841Zinc finger, RING-type
PfamPF145991.3E-27179236No hitNo description
Gene3DG3DSA:2.20.28.102.1E-20202240IPR004039Rubredoxin-type fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDGGFEPQVS IDDDHSHQKV NSLTDMESGN FGHCHNEAKQ NSLEVDPFDR HNVPRPTISF  60
APCATPNKMF SNTVSSVGFA WETIFAPNAS SLTMIIGGGE NVFHCNKCGC CYSKAMKDSH  120
NCVENVMHHN CPVCFEFLFD TREDITVLRC GHNIHLECVK EMERHYQYSC PVCSKSFRNM  180
SRVWEKLDEE VAGTPMPQKY QNKMVWILCN DCGETSQVNF HIVAHKCLKC KSYNTRKTQR  240
ASVILV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2k2d_A3e-17176238769RING finger and CHY zinc finger domain-contai
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.13916e-87root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349743.11e-117PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like
TrEMBLM5VRH31e-101M5VRH3_PRUPE; Uncharacterized protein
STRINGVIT_08s0007g04790.t014e-95(Vitis vinifera)